University of Oxford Crest

Dr. Eric Werner

Contact: eric.werner@dpag.ox.ac.uk

Home Publications Seminars/Talks Bio



Current Seminar

  • Eric Werner and Denis Noble, "Conceptual and Logical Foundations of Information in Multiagent Systems (with applications to systems biology), Unversity of Oxford, Balliol College, Massey Room, Thursdays 1-2:30PM. Not meeting this term. Abstract
  • Denis Noble and Eric Werner, "Conceptual Foundations of Systems Biology", Unversity of Oxford, Balliol Graduate Centre, The Praefectus’s Study, Holywell Manor, Manor Road, Oxford, Thursdays 3:45-5:30PM. PDF

Invited Talks and Tutorials


    • Werner, E. "Cancer's Hidden Networks" Oxford Scientific Society, 23 May 2013. See it on YouTube. (abstract)
    • Werner, E. "Linking genomic sequence to organismal development", Workshop on genotype-phenotype modelling, Research School in Systems Biology (RS-SysBio) and Centre for Integrative Genetics (CIGENE), Norsk Landbruksmuseum, UMB Campus Ås, Norway, Oct. 12, 2012.
    • Werner, E. "Local and Global Control in Development and Evolution", Symposium on Data Intensive Biology: Why Google Won´t Replace Science, Konrad Lonrez Institute, Vienna, Austria, July 14, 2012.
    • Werner, E. "Cancer Networks", Weatherall Institute of Molecular Medicine WIMM, Oxford, April 26, 2012.
    • Werner, E. "Developmental Control Networks in Ontogeny and Evolution", Workshop on the Philosophy of Biology, All Souls College, Oxford, April 18, 2012.
    • Werner, E. "Developmental Networks, Local and Global", Conceptual Foundations of Systems Biology Workshop, BII Balliol Interdisciplinary Institute, Balliol College, March 20, 2012.
    • Werner, E. "Stem Cell Networks: Frontiers of modeling and simulation", Oxford Stem Cell Institute Annual Symposium, Oxford Stem Cell Institute, March 15, 2012.
    • Werner, E. "Frontiers of Systems Biology", Dept. of Zoology, University of Oxford, March 2, 2012.
    • Werner, E. "Cracking the Code: Frontiers of Systems Biology", DTC Doctoral Training Centre, University of Oxford, Feb 9, 2012.
    • Werner, E. "Frontiers of Systems Biology", DTC Doctoral Training Centre, University of Oxford, Oct 10, 2011.
    • Werner, E. "Meaning in the Biological Universe", Keynote Speaker, ICSB 2010, International Conference on Systems Biology, Edinburgh 8:30AM, Oct. 14, 2010, (Replaced Sydney Brenner who could not attend).
    • Werner, E. "Synthetic multi-cellular systems biology", 33rd Steenbock Symposium: Synthetic Genes to Synthetic Life (in honor of Gobind Khorana), July 30-Aug2, 2009.
    • Werner, E. "The complexity of ontogeny", ENS Paris, July 25, 2009.
    • Werner, E. "Understanding Cancer Using Computer Simulation of Multicellular Systems", 2nd Paris Workshop on MAS in Biology at meso or macroscopic scales, LPNHE, Paris, France, June 23, 2009.
    • Werner, E. "Systems Paleontology?  or Can we understand the Cambrian Explosion in silico?", Seminar at the Complex Systems Institute, École Normale Supérieure, Lyon, France, April 1, 2009.
    • Werner, E. "How epi is epigenetics? or Where is the information for ontogeny and evolution?", Colloquium: Genes and Environment: Darwin and Lamarck revisited, Maison Française, University of Oxford, March 13/14, 2009.
    • Werner, E. "In silico ontogenesis and the evolution of complex multicellular life", Symposium: Darwin’s Lost World – the Early History of Life and the Planet, Earth Sciences, University of Oxford, March 12, 2009.
    • Werner, E. "What do genes mean?" Oxford University Science Society, University of Oxford, April 25, 2007. Abstract
    • Werner, E. "What do genes mean?" Cambridge University Science Society, University of Cambridge, Feb 27, 2007. Abstract
    • Werner, E. "Communication and complexity limits in systems of social agents", Complex Agent Based Dynamic Networks, Complex Adaptive Systems Group Seminars, Saïd Business School, University of Oxford,Feb 20, 2007.
    • Werner, E. "What do genes mean?", Seminar Series, Trinity College Science Society, University of Cambridge, Feb 8, 2007.Abstract
    • Werner, E. "Net Based Pharmacodynamics May Change the Pharmaceutical Industry", Abstract, International Conference Converging Sciences 2006, Trento, Italy, 16-17 October 2006.
    • Werner, E. "Understanding Genomes by combining synthetic and multicellular systems biology", Department of Biological Sciences, National University of Singapore, Singapore, June 9, 2006.
    • Werner, E. "Genome semantics: A possible path to understanding by combining synthetic and systems biology", Systems Biology Workshop - From single cells to environments, Plant Biotechnology Centre, Primary Industries Research Victoria, La Trobe University, Melbourne, Australia, May 23, 2006.
    • Werner, E. "Integrating synthetic biology with systems biology to understand natural biological systems", University of Oxford, Oxford, England, May 4, 2006.
    • Werner, E. "A research paradigm for systems and natural biology: Integrating in vivo and in silico modeling methodologies for minimal multicellular systems in drug discovery" Abstract, Fifth European Workshop in Drug Design (VEWDD) May 29th - June, 05th, 2005, Certosa di Pontignano - Siena, Italy. http://www.unisi.it/EWDD/,
    • Werner, E. "Systems biology top down"Abstract, Symposium on Systems Biology: A New Venue for Exploring Mechanisms of Developmental Toxicity, Society for Toxicology 43rd Annual Meeting, March 21-25, 2004. Society for Toxicology
    • Werner, E. "Weeding out complex networks to find drug targets" [Abstract], SMi Conference: Predictive in Silico Models in Drug Discovery and Development, London, March 26-27, 2003.smi-online.co.uk
    • Werner, E., "Taking the minimal cell to the minimal organism", World Drug Discovery Summit, Copenhagen, Denmark, Feb. 19, 2003.[Abstract], http://www.wdd.worldtradeco.com/
    • Werner, E., "In Silico Multicellular Biology and Genomics"[Abstract], CHI Beyond Genome In Silico Biology, San Diego, June 2002.
    • Werner, E., "In Silico Multicellular Systems Biology"[Abstract], IBM BlueGene Conference (Systems Biology), Edinburgh, Scotland, March 2002. [This short talk was given at the end of the conference and was not listed on the conference program.]
    • Werner, E., "The Web of Communication and Cooperation in Multi-Agent Systems" [Abstract], University of Edinburgh, Scotland, March 2002.
    • Werner, E., "Bioinformatics and Systems Biology Seminar", Oberseminar, University of Munich, Munich, Germany Summer Semester 2000.
    • Werner, E., "Bioinformatics Tutorial", Technical University of Munich, Munich, Germany, Summer 2000
    • Werner, E., "Globalization of the Genome", University of Munich, Munich, Germany, Summer 2000
    • Werner, E., "Ontogeny of the Social Self", Keynote speaker, AAAI Symposium on Socially Intelligent Agents, Massachusetts Institute of Technology (MIT), Boston, Mass, November 1997.
    • Werner, E., "Computational Biology and the Genome", Pharmatics'97, Tutorial, Philadelphia, PA, June 1997.
    • Werner, E., "Evolution of Socially Intelligent Agents", Invited speaker, MAAMAW97, Ronneby, Sweden, May 1997.
    • Werner, E., "Overview of Distributed Artificial Intelligence", University of Stockholm, Stockholm, Sweden, June 1993.
    • Werner, E., "The Logic of Plans with Simultaneous Actions", invited talk, ECAI-92 Workshop, Beyond Sequential Planning, Vienna, Austria, August 1992.
    • Werner, E., "The Self and the Social World: A Computational Theory of Social Development", invited talk, Giornata di Lavoro su Intelligenza Artificiale Distribuita, CNR and ENEA sponsored Symposium, Rome, August 1992.
    • Werner, E., "Ontogeny of the Social Self", Symposium on Social Simulation, University of Surrey, United Kingdom, March 1992.
    • Werner, E., "Generating Cooperative Behavior", invited talk, University of Brisbane, Brisbane, Australia, March 1992.
    • Werner, E., "Multi-Agent Planning and Uncertainty", invited talk, Griffiths University, Brisbane, Australia, March 1992.
    • Werner, E., "Planning and Uncertainty", invited seminar, University of Sydney, Sydney, Australia, March 1992.
    • Werner, E., "Generating Cooperative and Noncooperative Behavior", talk, University of Melbourne, February 1992.
    • Werner, E., "Introduction to Planning and Uncertainty", invited talk, AAII, Australian Artificial Intelligence Institute, Melbourne, Australia, Feb. 1992.
    • Werner, E., "Can Robots Become Social Beings?", talk, AAII, Australian Artificial Intelligence Institute, Melbourne, Australia, Jan. 1992.
    • Werner, E., "An Overview of DAI", First Japanese Workshop on Multi-Agent Systems, Japan, Dec. 1991.
    • Werner, E., "Generating Cooperative and Noncooperative Behavior", invited talk, FRIENDS-91, Tokyo, Japan, November 1991.
    • Werner, E., "Integrating Social Rationality with Communication and Cooperation in Multi-Agent Systems", invited talk, FRIEND21 Workshop on Communication and Multi-Agents, Tokyo, Japan, November 1991.
    • Werner, E., "What's Distributed AI All About Anyway?", invited talk, University of Wisconsin, Madison, Wisconsin, U.S.A., Oct. 1991.
    • Werner, E., "Generating Cooperative Behavior", invited talk, Workshop on Cooperative Knowledge Processing, Trento-Pergine, Italy, May 1991.
    • Werner, E., "Planning and Uncertainty", European Workshop on Planning, Bonn, Germany. Also, invited talk, UK Planning SIG, Cambridge, UK, April 1991.
    • Werner, E., "The Logic of Plans", invited talk, Essex University, Colchester, United Kingdom, Feb. 1991.
    • Werner, E., "What Ants Cannot Do", invited talk, IEE Colloquium on Intelligent Agents, Savoy Place, London, Feb. 1991.
    • Werner, E., "Communication, Cooperation and Logic" An invited lecture series, Institute of Psychology CNR, National Research Council, Rome, Italy, Dec. 1990.
    • Werner, E., "What Can Agents Do Together? A Semantics for Reasoning About Single and Multiagent Cooperative Ability", ECAI-90, The 9th European Conference on Artificial Intelligence, Stockholm, Sweden, August, 1990.
    • Werner, E., "A Unified View of Information, Intention and Ability", MAAMAW-90, The Second European Workshop on Modeling Autonomous Agents in Multiagent Worlds, Saint-Quentin en Yvelines, France, August, 1990.
    • Werner, E., "Making Systems Cooperative through Social Knowledge", CKBS-90, A Working Conference On Cooperating Knowledge Based Systems, University of Keele, England, October, 1990.
    • Werner, E., "Distributed Algorithms for Cooperating Agents", DAI-90, the 10th International Workshop on Distributed Artificial Intelligence, Bandera, Texas, October, 1990.
    • Werner, E., "Introduction to Research in Distributed AI", invited talk to the Philosophers Table, Schwerin, East Germany, May 1990.
    • Werner, E., "Verteilte Kooperationsalgorithmen", talk to the Kuesten Informatik Meeting, Kloster Nuetschau, bei Bad Oldesloe, Germany, May 1990.
    • Werner, E., "Communication and Cooperation: A New Perspective for Cognitive Science", Invited Talk, Presented to the Cognitive Science Discussion Group, University of Hamburg, Hamburg, Germany, Oct. 1989.
    • Werner, E., "Cooperation Algorithms", Invited Speaker, First European Workshop on Distributed Artificial Intelligence, St. John's College Cambridge, England, August 1989.
    • Werner, E., "The Contract Net as a Social Structure", presented to Oberseminar, Department of Computer Science, U. of Hamburg, Hamburg, January, 1989.
    • Werner, E., "Communication and Organization in DAI", Tutorial, Technical University of Berlin (TU-Berlin), Berlin, November, 1988.
    • Werner, E., "A Unified View of Information, Intention, and Ability", presented at GWAI-88, The German Workshop on Artificial Intelligence, Eringerfeld, West Germany, September, 1988.
    • Werner, E., "A Formal Computational Semantics and Pragmatics of Speech Acts", COLING-88, The 12th International Conference on Computational Linguistics, Budapest, Hungary, August, 1988.
    • Werner, E., "Social Intentions", Panel on Interactions Among Intelligent Agents, ECAI-88, European Conference on Artificial Intelligence, Munich, Germany, August, 1988.
    • Werner, E., "Socializing Robots: A Theory of Communication and Social Structure for Distributed Artificial Intelligence", presented at the 8th AAAI sponsored Workshop on Distributed Artificial Intelligence, Lake Arrowhead, California, May, 1988.
    • Werner, E., "Toward a Theory of Communication and Cooperation for Multiagent Planning", The Second Conference on Theoretical Aspects of Reasoning About Knowledge, Asilomar, California, March, 1988.
    • Werner, E., "Situation Theory and Knowledge Representation", Tutorial consisting of 3 long talks to KOGS(Cognitive Science Group), Department of Computer Science, University of Hamburg, Hamburg, Germany, June 1986.
    • Werner, E., "Communication and Knowledge Representation", Advanced Computational Methods Center, ACMC, University of Georgia, Athens, Georgia, November 1985.
    • Werner, E., "A Society of Robots", Computing Research Laboratory, CRL, University of New Mexico, Las Cruces, New Mexico, May 1985.
    • Werner, E., "Knowledge Representation in Situation Semantics", Montana Academy of Sciences, 45th Annual Meeting, at Montana College of Mineral Science and Technology, Butte, Montana, April 1985.
    • Werner, E., "The Future of Robotics", Keynote Address, Local Chapter of the Association of Computing Machinery, ACM, University of Montana, Missoula, Montana, May 1985.

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Understanding biological systems
Understanding biology is the purpose of the new area of systems biology. However, some of the basic concepts are still in the process of being developed. In our seminar "The conceptual foundations of systems biology" we look at the foundations of the discipline. The approach is interdisciplinary integrating biology, mathematics, computer science, chemistry, physics, and philosophy. Published: 27 October 2006

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