2011
[1] Jun Zhao, Satya Sahoo, Paolo Missier, Amit Sheth, and Carole Goble. Extending semantic provenance into the web of data. IEEE Internet Computing, 15(1):40-48, 2011. [ bib ]
[2] Joann S. Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, M. Scott Marshall, James P. McCusker, Deborah L. McGuinness, James McGurk, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, and Michel Dumontier. The translational medicine ontology: Driving personalized medicine by bridging the gap from bedside to bench. Journal of Biomedical Semantics (Bio-Ontologies 2010 Special Issue), 2011. To appear. [ bib ]
[3] Jun Zhao, Oscar Corcho, Paolo Missier, Khalid Belhajjame, David Newman, David de Roure, and Carole A. Goble. Chapter:eScience. Handbook of semantic web technologies, 2011. [ bib ]
[4] Keith Alexander, Richard Cyganiak, Michael Hausenblas, and Jun Zhao. Describing linked datasets with the void vocabulary, 2011. W3C Interest Group Note 03 March 2011. [ bib | http ]
2010
[1] Helena Deus, Jun Zhao, Satya Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M.Scott Marshall, and Kei-Hoi Cheung. Provenance of microarray experiments for a better understanding of experiment results. In Proceedings of The Second International Workshop on the role of Semantic Web in Provenance Management, Shanghai, China, 2010. [ bib ]
[2] Paolo Missier, Satya Sahoo, Jun Zhao, Carole Goble, and Amit Sheth. Janus : from workflows to semantic provenance and linked open data. In Proceedings of The third International Provenance and Annotation Workshop, Troy, NY, U.S.A, 2010. [ bib ]
[3] Olaf Hartig and Jun Zhao. Publishing and consuming provenance metadata on the web of linked data. In Proceedings of The third International Provenance and Annotation Workshop, Troy, NY, U.S.A, 2010. [ bib ]
[4] Li Ding, Jie Bao, James Michaelis, Jun Zhao, and Deborah L. McGuinness. Reflections on provenance ontology encodings. In Proceedings of The third International Provenance and Annotation Workshop, Troy, NY, U.S.A, 2010. [ bib ]
[5] Jun Zhao, Chris Bizer, Yolanda Gil, Paolo Missier, and Satya Sahoo. Provenance requirements for the next version of rdf. In W3C RDF Next Steps, Palo Alto, CA U.S.A, 2010. [ bib ]
[6] Olaf Hartig and Jun Zhao. Integrating provenance into the web of data. In Proceedings of the Poster Session at the 7th Extended Semantic Web Conference (ESWC), Heraklion, Greece, 2010. [ bib ]
[7] Jun Zhao. Publishing traditional chinese medicine knowledge as linked data on the web. Journal of Chinese Medicine, Special Issue on Semantic Web for Chinese Medicine, 2010. To appear. [ bib ]
[8] Matthias Samwald, Michel Dumontier, Jun Zhao., Joanne Luciano, M. Scott Marshall, and Kei Cheung. Integrating findings from traditional medicine into modern pharmaceutical research through semantic technologies. Journal of Chinese Medicine, Special Issue on Semantic Web for Chinese Medicine, 2010. To appear. [ bib ]
[9] Alistair Mile, Jun Zhao, Graham Klyne, David Shotton, and Helen White-Cooper. Openflydata: An exemplar data web integrating gene expression data on the fruit fly drosophila melanogaster. Journal of Biomedical Informatics, 2010. To appear. [ bib ]
[10] Jun Zhao, Graham Klyne, Alistair Miles, Elizabeth Benson and Elin Gudmannsdottir, Helen White-Cooper, and David Shotton. Flyted: the drosophila testis gene expression database. Nucle. Acid (Database Issue 2010), (38):D710-D715. doi:10.1093/nar/gkp1006. [ bib ]
[11] D.De Roure, C.Goble, S.Aleksejevs, S.Bechhofer, J.Bhagat, D.Cruickshank, P.Fisher, N. Kollara, D. Michaelides, P. Missier, D. Newman, M. Ramsden, M. Roos, K. Wolstencroft, E. Zaluska, and J. Zhao. The evolution of myexperiment. pages 153-160, Brisbane, Australia, 2010. [ bib ]
[12] Marco Roos, Sean Bechhofer, Jun Zhao, Paolo Missier, David R. Newman, David De Roure, and M. Scott Marshall. A linked data approach to sharing workflows and workflow results. In Proc. of Fourth International Symposium On Leveraging Applications of Formal Methods, Verification, and Validation, volume 6415/2010, pages 340-354, Amirandes, Greece, 2010. [ bib ]
2009
[1] Anja Jentzsch, Jun Zhao, Oktie Hassanzadeh, Kei-Hoi Cheung, Matthias Samwald, and Bo Andersson. Linking open drug data. In Triplification Challenge 2009, Graz, Austria, 2009. First Prize in the iTriplification Challenge, http://blog.aksw.org/2009/triplification-challenge-2009-winners/. [ bib | .pdf ]
[2] Olaf Hartig and Jun Zhao. Using web data provenance for quality assessment. In International Workshop on Semantic Web and Provenance Management, Washington D.C., USA, 2009. http://purl.org/net/provenance/. [ bib ]
[3] Jun Zhao, Anja Jentzsch, Matthias Samwald, and Kei-Hoi Cheung. Linked data for connecting traditional chinese medicine and western medicine. In The Sixth International Workshop of Data Integration in the Life Sciences (Poster&Demo), Manchester, UK, 2009. [ bib | .pdf ]
[4] Jun Zhao, Alistair Miles, Graham Klyne, and David Shotton. Openflydata: The way to go for biological data integration. In The Sixth International Workshop of Data Integration in the Life Sciences, pages 47-54, Manchester, UK, 2009. http://www.springerlink.com/content/jn41378l3426j104/fulltext.pdf. [ bib ]
[5] Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, and Adrian Paschke. A journey to semantic web query federation in life sciences. BMC Bioinformatics, 10:S10, 2009. [ordered by author]. [ bib ]
[6] Keith Alexander, Richard Cyganiak, Michael Hausenblas, and Jun Zhao. Describing linked datasets. In Linked Data on the Web Workshop in the International World Wide Web Conference, Madrid, Spain, 2009. http://events.linkeddata.org/ldow2009/papers/ldow2009_paper20.pdf. [ bib ]
[7] Keith Alexander, Richard Cyganiak, Michael Hausenblas, and Jun Zhao. void guide - using the vocabulary of interlinked datasets, 2009. http://rdfs.org/ns/void-guide. [ bib ]
[8] Keith Alexander, Richard Cyganiak, Michael Hausenblas, and Jun Zhao. The vocabulary of interlinked datasets (void), 2009. http://rdfs.org/ns/void. [ bib ]
[9] Jun Zhao, Alistair Miles, and David Shotton. Linked data and provenance in biological data webs. Briefings in Bioinformatics, (2):139-152, 2009. [ bib ]
2008
[1] Paolo Missier, Khalid Belhajjame, Jun Zhao, and Carole Goble. Data lineage model for taverna workflows with lightweight annotation requirements. In The Second International Provenance and Annotation Workshop, pages 17-30, 2008. http://www.sci.utah.edu/ipaw2008/papers/Paper%207/ipaw08.pdf. [ bib ]
[2] Jun Zhao, Graham Klyne, and David Shotton. Building a semantic web image repository for biological research images. In Sean Bechhofer, Manfred Hauswirth, Joerg Hoffmann, and Manolis Koubarakis, editors, The 5th European Semantic Web Conference, pages 154-169, 2008. http://www.eswc2008.org/. [ bib ]
[3] Jun Zhao, Graham Klyne, and David Shotton. Provenance and linked data in biological data webs. In The 17th International World Wide Web Conference (LDOW2008), 2008. http://events.linkeddata.org/ldow2008/. [ bib ]
2007
[1] David Shotton, Jun Zhao, and Graham Klyne. JISC Defining Image Access Project Final Report - Images and Repositories: Present status and future possibilities. Section 12: Project software developments. Project report, University of Oxford, August 2007. http://imageweb.zoo.ox.ac.uk/pub/2007/DefiningImageAccess/FinalReport/. [ bib ]
[2] Jun Zhao, Carole Goble, Robert Stevens, and Daniele Turi. Mining taverna's semantic web of provenance. Journal of Concurrency and Computation:Practice and Experience, 2007. doi:10.1002/cpe.1231. [ bib ]
[3] Robert Stevens, Jun Zhao, and Carole Goble. Using provenance to manage knowledge of in silico experiments. briefings in bioinformatics. Briefings in Bioinformatics, 8(3):183-194, 2007. doi:10.1093/bib/bbm015. [ bib ]
[4] Jun Zhao. A conceptual model for e-science provenance. Ph.d. thesis, University of Manchester, June 2007. http://users.ox.ac.uk/~zool0770/jun_thesis_final_2007.pdf. [ bib ]
[5] Tom Oinn, Peter Li, Douglas B. Kell, Carole Goble, Antoon Goderis, Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi, and Jun Zhao. Workflows for e-Science, chapter Taverna/myGrid : Aligning a Workflow System with the Life Sciences Community, pages 300-319. LNCS Springer, 2007. isbn:9781846285196 and isbn:1846285194. [ bib ]
2006
[1] Carole Goble, Katy Wolstencroft, Antoon Goderis, Duncan Hull, Jun Zhao, Pinar Alper, Phillip Lord, Chris Wroe, Khalid Belhajjame, Daniele Turi, Robert Stevens, and David De Roure. Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, chapter Knowledge Discovery for in silico Experiments with Taverna. Springer Verlag, 2006. doi:10.1007/978-0-387-48438-9_17. [ bib ]
[2] Jun Zhao, Carole Goble, and Robert Stevens. An identity crisis in the life sciences. In Proc. of the 3rd International Provnenace and Annotation Workshop, Chicago, USA, May 2006. LNCS. doi:10.1007/11890850_26. extended paper. [ bib ]
2005
[1] Jun Zhao, Phillip Lord, Pinar Alper, Chris Wroe, and Carole Goble. The implications of semantic web technologies for support of the e-science process. In Proc. of the 3rd UK e-Science All Hands Meeting, Nottingham, UK, September 2005. [ bib ]
2004
[1] Jun Zhao, Chris Wroe, Carole Goble, Robert Stevens, Dennis Quan, and Mark Greenwood. Using semantic web technologies for representing e-science provenance. In Proc. of the 3rd International Semantic Web Conference, volume 3298, pages 92-106, Hiroshima, Japan, 2004. doi:10.1007/b102467. [ bib ]
[2] Jun Zhao, Carole Goble, and Robert Stevens. Semantically linking and browsing provenance logs for e-science. In Proc. of the 1st International Conference on Semantics of a Networked World, Lecture Notes in Computer Science, Paris, France, 2004. Springer. doi:10.1007/b102069. [ bib ]
[3] Phillip Lord, Pinar Alper, Chris Wroe, Robert Stevens, Carole Goble, Jun Zhao, Duncan Hull, and Mark Greenwood. The semantic web: Service discovery and provenance in mygrid. In Proc. of Semantic Web for Life Sciences Workshop, 2004. [ bib ]
[4] Jun Zhao, Robert Stevens, Chris Wroe, Mark Greenwood, and Carole Goble. The origin and history of in silico experiments. In Proc. of the 2nd UK e-Science All Hands Meeting, Nottingham, UK, September 2004. [ bib ]
[5] Jun Zhao, Carole Goble, and Robert Stevens. Semantic web applications to e-science in silico experiments. In Proc. of the 13th International World Wide Web Conference (WWW 2004) on Alternate track papers & posters, pages 284-285, New York, USA, 2004. ACM. doi:10.1145/1013367.1013437. [ bib ]
[6] Jun Zhao. A conceptual framework for e-science provenance. First year transfer report, University of Manchester, Sep 2004. [ bib ]
2003
[1] Mark Greenwood, Carole Goble, Robert Stevens, Jun Zhao, Matthew Addis, Darren Marvin, Luc Moreau, and Tom Oinn. Provenance of e-science experiments - experience from bioinformatics. In Proc. of the 2nd UK e-Science All Hands Meeting, 2003. [ bib ]
[2] Jun Zhao, Carole Goble, Mark Greenwood, Chris Wroe, and Robert Stevens. Annotating, linking and browsing provenance logs for e-Science. In Proc. of the 2nd International Semantic Web Conference (ISWC2003) Workshop on Retrieval of Scientific Data, Florida, October 2003. [ bib ]
[3] Jun Zhao. Annotating, linking and browsing provenance logs for e-science. Msc. thesis, University of Manchester, Sep 2003. [ bib ]

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