Publications

Project Grants
  1. Development of a System for Real Time Integration and Display of Quantitative Multi-modality Data During Cardiac Catheterisation, Principal Investigator: Robin P. Choudhury, Co-Applicants: Abhirup Banerjee, Vicente Grau, and Giovanni Luigi De Maria, Grant amount of £183,050, British Heart Foundation (BHF), March 2020.


Principal Investigation
  1. Modelling Amyloid Beta Plaque Formation in Alzheimer's Disease, Principal Investigator: Abhirup Banerjee and Yeung-Yeung Leung, Turing Data Study Group, The Alan Turing Institute, September 2021.


Patents
  1. Abhirup Banerjee, Robin P. Choudhury, and Vicente Grau, Point-Cloud Method for 3D Reconstructions from 2D Projections, UK Patent Application No. GB1819596.6, filed by Oxford University Innovation (OUI), November 2018.


Articles in Peer-reviewed Journals
  1. * Abhirup Banerjee and Sujay Mukhoti, Characterization of A Robust Probabilistic Framework for Brain Magnetic Resonance Image Data Distributions, Stat, 12(1), e541, December 2023. (IF: 2.451, Q2, A)
  2. Mayooran Shanmuganathan, Ambra Masi, Matthew K. Burrage, Rafail A. Kotronias, Alessandra Borlotti, Roberto Scarsini, Abhirup Banerjee, Dimitrios Terentes-Printzios, Qiang Zhang, Evan Hann, Elizabeth Tunnicliffe, Andrew Lucking, Jeremy Langrish, Rajesh Kharbanda, Giovanni Luigi De Maria, Adrian P. Banning, Robin P. Choudhury, Keith M. Channon, Stefan K. Piechnik, and Vanessa M. Ferreira, Acute Response in the Noninfarcted Myocardium Predicts Long-Term Major Adverse Cardiac Events After STEMI, JACC: Cardiovascular Imaging, 16(1), pp. 46--59, January 2023. (IF: 16.051, Q1, A*).
  3. Naveed Akbar, Adam T. Braithwaite, Emma M. Corr, Graeme J. Koelwyn, Coen van Solingen, Clément Cochain, Antoine-Emmanuel Saliba, Alastair Corbin, Daniela Pezzolla, Malene Møller Jørgensen, Rikke Bæk, Laurienne Edgar, Carla De Villiers, Mala Gunadasa-Rohling, Abhirup Banerjee, Daan Paget, Charlotte Lee, Eleanor Hogg, Adam Costin, Raman Dhaliwal, Errin Johnson, Thomas Krausgruber, Joey Riepsaame, Genevieve E. Melling, Mayooran Shanmuganathan, Oxford Acute Myocardial Infarction Study (OxAMI), Christoph Bock, David R. F Carter, Keith M. Channon, Paul R. Riley, Irina A. Udalova, Kathryn J. Moore, Daniel Anthony, and Robin P. Choudhury, Rapid Neutrophil Mobilisation by VCAM-1+ Endothelial Extracellular Vesicles, Cardiovascular Research (Accepted), January 2022.
  4. Abhirup Banerjee, Julià Camps, Ernesto Zacur, Christopher M. Andrews, Yoram Rudy, Robin P. Choudhury, Blanca Rodriguez, and Vicente Grau, A Completely Automated Pipeline for 3D Reconstruction of Human Heart from 2D Cine MR Slices, Philosophical Transactions of the Royal Society A, 379(2212), pp. 1--21, December 2021.
  5. Michail Mamalakis, Andrew J. Swift, Bart Vorselaars, Surajit Ray, Simonne Weeks, Weiping Ding, Richard H. Clayton, Louise S. Mackenzie, and Abhirup Banerjee, DenResCov-19: A Deep Transfer Learning Network for Robust Automatic Classification of COVID-19, Pneumonia, and Tuberculosis from X-Rays, Computerized Medical Imaging and Graphics, 94, pp. 102008, December 2021.
  6. Milena Leo, Giovanni Luigi De Maria, Andre Briosa e Gala, Michael Pope, Abhirup Banerjee, Andrew Kelion, Michala Pedersen, Kim Rajappan, Matthew Ginks, Yaver Bashir, Ross J. Hunter, and Tim Betts, INtra-Procedural UltraSound Imaging for DEtermination of Atrial Wall Thickness and Acute Tissue Changes After Isolation of the Pulmonary Veins with Radiofrequency, Cryoballoon or Laser Balloon Energy: the INSIDE PVs Study, The International Journal of Cardiovascular Imaging, 37, pp. 3525--3535, September 2021.
  7. Abhirup Banerjee and Pradipta Maji, A Spatially Constrained Probabilistic Model for Robust Image Segmentation, IEEE Transactions on Image Processing, 29(1), pp. 4898--4910, December 2020.
  8. Abhirup Banerjee, Surajit Ray, Bart Vorselaars, Joanne Kitson, Michail Mamalakis, Simonne Weeks, Mark Baker, and Louise S.Mackenzie, Use of Machine Learning and Artificial Intelligence to predict SARS-CoV2 infection from Full Blood Counts in a population, International Immunopharmacology, 86, 106705, September 2020.
  9. Abhirup Banerjee, Francesca Galassi, Ernesto Zacur, Giovanni Luigi De Maria, Robin P. Choudhury, and Vicente Grau, Point-Cloud Method for Automated 3D Coronary Tree Reconstruction from Multiple Non- Simultaneous Angiographic Projections, IEEE Transactions on Medical Imaging, 39(4), pp. 1278--1290, April 2020.
  10. Abhirup Banerjee and Pradipta Maji, Segmentation of Bias Field Induced Brain MR Images Using Rough Sets and Stomped-t Distribution, Information Sciences, 504, pp. 520--545, December 2019.
  11. Abhirup Banerjee and Pradipta Maji, Spatially Constrained Student's t-Distribution Based Mixture Model for Robust Image Segmentation, Journal of Mathematical Imaging and Vision, 60(3), pp. 355--381, March 2018.
  12. Abhirup Banerjee and Pradipta Maji, Stomped-t: A Novel Probability Distribution for Rough- Probabilistic Clustering, Information Sciences, 421, pp. 104--125, December 2017.
  13. Abhirup Banerjee and Pradipta Maji, Rough-Probabilistic Clustering and Hidden Markov Random Field Model for Segmentation of HEp-2 Cell and Brain MR Images, Applied Soft Computing, 46, pp. 558--576, September 2016.
  14. Abhirup Banerjee and Pradipta Maji, Rough Sets and Stomped Normal Distribution for Simultaneous Segmentation and Bias Field Correction in Brain MR Images, IEEE Transactions on Image Processing, 24(12), pp. 5764--5776, December 2015.
  15. Abhirup Banerjee and Pradipta Maji, Rough Sets for Bias Field Correction in MR Images Using Contraharmonic Mean and Quantitative Index, IEEE Transactions on Medical Imaging, 32(11), pp. 2144--2155, November 2013.


Articles in Peer-reviewed Conference Proceedings
  1. Haorui He, Abhirup Banerjee, Marcel Beetz, Robin P. Choudhury, and Vicente Grau, Semi-Supervised Coronary Vessels Segmentation from Invasive Coronary Angiography with Connectivity-Preserving Loss Function, Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI) (Accepted), Kolkata, India, pp. 1--4, March 2022.
  2. Marcel Beetz, Abhirup Banerjee, Yuling Sang, and Vicente Grau, Combined Generation of Electrocardiogram and Cardiac Anatomy Models Using Multi-Modal Variational Autoencoders, Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI) (Accepted), Kolkata, India, pp. 1--4, March 2022.
  3. Marcel Beetz, Abhirup Banerjee, and Vicente Grau, Generating Subpopulation-Specific Biventricular Anatomy Models Using Conditional Point Cloud Variational Autoencoders, Proceedings of the International Workshop on Statistical Atlases and Computational Models of the Heart (STACOM), Strasbourg, France, pp. 75--83, January 2022.
  4. Marcel Beetz, Julius Ossenberg-Engels, Abhirup Banerjee, and Vicente Grau, Predicting 3D Cardiac Deformations With Point Cloud Autoencoders, Proceedings of the International Workshop on Statistical Atlases and Computational Models of the Heart (STACOM), Strasbourg, France, pp. 219--228, January 2022.
  5. Abhirup Banerjee, Ernesto Zacur, Robin P. Choudhury, and Vicente Grau, Optimised Misalignment Correction from Cine MR Slices using Statistical Shape Model, Proceedings of the Annual Conference on Medical Image Understanding and Analysis (MIUA), Oxford, UK, pp. 201--209, July 2021.
  6. Marcel Beetz, Abhirup Banerjee, and Vicente Grau, Biventricular Surface Reconstruction From Cine MRI Contours Using Point Completion Networks, Proceedings of the IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, pp. 105--109, April 2021.
  7. Abhirup Banerjee, Robin P. Choudhury, and Vicente Grau, Optimized Rigid Motion Correction from Multiple Non-Simultaneous X-Ray Angiographic Projections, Proceedings of the International Conference on Pattern Recognition and Machine Intelligence (PReMI), Tezpur, India, pp. 61--69, November 2019.
  8. Abhirup Banerjee, Rajesh K. Kharbanda, Robin P. Choudhury, and Vicente Grau, Automated Motion Correction and 3D Vessel Centerlines Reconstruction from Non-simultaneous Angiographic Projections, Proceedings of the Statistical Atlases and Computational Models of the Heart (STACOM), Granada, Spain, pp. 12--20, February 2019.
  9. Abhirup Banerjee and Pradipta Maji, Rough Sets for Finite Mixture Model Based HEp-2 Cell Segmentation, Proceedings of the International Conference on Rough Sets and Knowledge Technology (RSKT), Tianjin, China, pp. 459--469, November 2015.
  10. Abhirup Banerjee and Pradipta Maji, Rough Set Based Homogeneous Unsharp Masking for Bias Field Correction in MRI, Proceedings of the International Conference on Image Analysis and Processing (ICIAP), Naples, Italy, pp. 542--551, September 2013.
  11. Abhirup Banerjee and Pradipta Maji, Contraharmonic Mean Based Bias Field Correction in MR Images, Proceedings of the International Conference on Computer Analysis of Images and Patterns (CAIP), York, UK, pp. 523--530, August 2013.


Preprints
  1. Surajit Ray, Abhirup Banerjee, Andrew Swift, Joseph W. Fanstone, Michail Mamalakis, Bart Vorselaars, Craig Wilkie, Joby Cole, Louise S. Mackenzie, and Simonne Weeks, A Robust and Highly Accurate Mortality Prediction Calculator for COVID-19 Patients Based on Lymphocyte count, Urea, C-Reactive Protein, Age and Sex (LUCAS) With Chest X-Rays, Scientific Reports (Under Minor Revision), December 2021.
  2. Abhirup Banerjee and Sujay K. Mukhoti, Characterization of A Robust Probabilistic Framework for Image Data Distributions, Statistics in Medicine (Under Submission), September 2021.
  3. Soham Ghosh, Sujay Mukhoti, and Abhirup Banerjee, Poor and Sick Newsboy Model: A Robust Generalisation with Misspecified Demand, European Journal of Operational Research (Under Submission), October 2021.


Abstracts in Peer-reviewed Journals
  1. Mayooran Shanmuganathan, Ambra Masi, Matthew K. Burrage, Rafail A. Kotronias, Alessandra Borlotti, Roberto Scarsini, Abhirup Banerjee, Dimitrios Terentes-Printzios, Qiang Zhang, Evan Hann, Elizabeth Tunnicliffe, Andrew Lucking, Jeremy Langrish, Rajesh Kharbanda, Giovanni Luigi De Maria, Adrian P. Banning, Robin P. Choudhury, Keith M. Channon, Stefan K. Piechnik, and Vanessa M. Ferreira, Long-Term Prognosis After Acute ST-Segment Elevation Myocardial Infarction Is Determined By Characteristics In Both Non-Infarcted and Infarcted Myocardium on Cardiovascular Magnetic Resonance Imaging, Heart, 107(Suppl 3), A1, November 2021.
  2. Michael Pope, Pawel Kuklik, Abhirup Banerjee, Andre Briosa e Gala, Milena Leo, Michael Mahmoudi, John Paisey, and Timothy R. Betts, Insights into Electrophysiological Mechanisms of Atrial Fibrillation Propagation using Simultaneous Bi-Atrial Mapping, EP Europace, 23(Suppl 3), pp. iii147, May 2021.
  3. Malgorzata Wamil, Alessandra Borlotti, Abhirup Banerjee, Lisa Gaughran, Giovanni Luigi De Maria, Adrian P. Banning, Rajesh Kharbanda, Robin P. Choudhury, and Keith M. Channon, Impaired Myocardial Healing in Patients with Diabetes After ST-Elevation Myocardial Infarction, European Heart Journal, 40(Suppl 1), pp. 2666, October 2019.
  4. Naveed Akbar, Alastair Corbin, Eleanor Hogg, Abhirup Banerjee, Charlotte Lee, Genevieve Melling, Laurienne Edgar, Rebecca Dragovic, Dave Carter, Paul Riley, Irina Udalova, Daniel Anthony, and Robin P. Choudhury, Endothelial Cell Derived Extracellular Vesicles Mediate Immune Cell Deployment from the Spleen and Transcriptional Programming Following Acute Myocardial Infarction, European Heart Journal, 40(Suppl 1), pp. 1361, October 2019.
  5. Naveed Akbar, Alastair Corbin, Sam Dawkins, Charlotte Lee, Eleanor Hogg, Laurienne Edgar, Mala Gunadasa-Rohling, Abhirup Banerjee, Genevieve Melling, Rebecca Dragovic, Oxford Acute Myocardial Infarction Study (OxAMI), Dave Carter, Paul Riley, Irina Udalova, Keith M. Channon, Daniel Anthony, and Robin P. Choudhury, Endothelial Cell Derived Extracellular Vesicles Mediate Neutrophil Deployment from the Spleen Following Myocardial Infarction, Heart, 105(Suppl 6), pp. A181, May 2019.


Abstracts in Peer-reviewed Conference Proceedings
  1. Mayooran Shanmuganathan, Rafail A. Kotronias, Matthew K. Burrage, Yujun Ng, Abhirup Banerjee, Alessandra Borlotti, Maria Emfietzoglou, Cheng Xie, Federico Marin, Betty Raman, Alexander Menzter, Peter Manley, Alison Fletcher, Elizabeth Tunnicliffe, Stefan Neubauer, Stefan K. Piechnik, Keith Channon, and Vanessa Ferreira, Hospitalized Patients with COVID-19 and Bacterial Sepsis Have Similar T1 and T2 Abnormalities on CMR, SCMR 25th Annual Scientific Sessions, February 2022.
  2. Mayooran Shanmuganathan, Ambra Masi, Matthew Burrage, Rafail Kotronias, Alessandra Borlotti, Abhirup Banerjee, Roberto Scarsini, Dimitrios Terentes-Printzios, Elizabeth Tunnicliffe, Qiang Zhang, Evan Hann, Giovanni De Maria, Andrew Lucking, Jeremy Langrish, Rajesh Kharbanda, Adrian Banning, Robin Choudhury, Keith Channon, Stefan K. Piechnik, and Vanessa Ferreira, Both Non-infarct and Infarct Myocardial T1 Post-STEMI are Independent and Incremental Predictors of Long-term Outcomes Beyond Conventional CMR Biomarkers, SCMR 25th Annual Scientific Sessions, February 2022.
  3. Anna Boss, Abhirup Banerjee, Michail Mamalakis, Andrew Swift, Surajit Ray, Craig Wilkie, Bart Vorselaars, Joseph W. Fanstone, Simonne Weeks, and Louise S. Mackenzie, Can Kidney Function Be Used To Predict Survival of COVID-19 in Hospitals? Predictive Modelling in a Retrospective Cohort Study, Pharmacology 2021, British Pharmacological Society, September 2021.
  4. Craig Wilkie, Surajit Ray, Abhirup Banerjee, Michail Mamalakis, Andrew Swift, Bart Vorselaars, Joseph W. Fanstone, Simonne Weeks, and Louise S. Mackenzie, A Simplified Risk Tool, LUCAS, Which Predicts the Outcome for Patients with SARS-CoV-2, Also Predicts Survival from Influenza A and Influenza B Infections, Pharmacology 2021, British Pharmacological Society, September 2021.
  5. Milena Leo, Abhirup Banerjee, Andre Briosa e Gala, Michael Pope, Michala Pedersen, Kim Rajappan, Matthew Ginks, Yaver Bashir, Ross J. Hunter, and Tim Betts, Lesion Size Index (LSI) – Guided Catheter Ablation for Atrial Fibrillation: Can Tissue Impedance Drop Help Identifying Desirable Settings and Target Indices For Ablation?, Heart Rhythm Congress (HRC), September 2020.
  6. Abhirup Banerjee, Giovanni Luigi De Maria, Keith M. Channon, Adrian P. Banning, Robin P. Choudhury, and Vicente Grau, Automated 3D Coronary Sinus Reconstruction from Non-simultaneous Angiographic Projections, IEEE International Symposium on Biomedical Imaging (ISBI), Venice, Italy, April 2019.
  7. Naveed Akbar, Alastair Corbin, Eleanor Hogg, Abhirup Banerjee, Charlotte Lee, Laurienne Edgar, Rebecca Dragovic, Irina Udalova, Daniel Anthony, and Robin P. Choudhury, Extracellular Vesicles Mediate Immune Cell Deployment from the Spleen Following Acute Myocardial Infarction, UK Society for Extracellular Vesicles (UKEV) Forum, Sheffield, UK, December 2018.