Jarvis Lab



Sun, Y., Yao, Z., Ye, Y., Fang, J., Chen, H., Lyu, Y., Broad, W., Fournier, M., Chen, G., Hu, Y., Mohammed, S., Ling, Q. and Jarvis, R.P. (2022) Ubiquitin-based pathway acts inside chloroplasts to regulate photosynthesis. bioRxiv 10.1101/2022.06.06.494369.

Loudya, N., Maffei, D.P.F., Bédard, J., Ali, S.M., Devlin, P., Jarvis, R.P. and López-Juez, E. (2022) Mutations in the chloroplast inner envelope protein TIC100 impair and repair chloroplast protein import and impact retrograde signaling. Plant Cell 34: 3028-3046.

Watson, S.J., Li, N., Ye, Y., Wu, F., Ling, Q. and Jarvis, R.P. (2021) Crosstalk between the chloroplast protein import and SUMO systems revealed through genetic and molecular investigation in Arabidopsis. eLife 10: e60960.

Ling, Q., Sadali, N.M., Soufi, Z., Zhou, Y. Huang, B., Zeng, Y., Rodriguez-Concepcion, M. and Jarvis, R.P. (2021) The chloroplast-associated protein degradation pathway controls chromoplast development and fruit ripening in tomato. Nat. Plants 7: 655-666.  (Press release: Oxford; Commentary: Nature Plants).

Kikuchi, Y., Nakamura, S., Woodson, J.D., Ishida, H., Ling, Q., Hidema, J., Jarvis, R.P., Hagihara, S. and Izumi, M. (2020) Chloroplast autophagy and ubiquitination combine to manage oxidative damage and starvation responses. Plant Physiol. 183: 1531-1544.

Loudya, N., Okunola, T., He, J., Jarvis, P. and López-Juez, E. (2020) Retrograde signalling in a virescent mutant triggers an anterograde delay of chloroplast biogenesis that requires GUN1 and is essential for survival. Philos. Trans. R. Soc. Lond. B Biol. Sci. 375: 20190400.

Thomson, S.M., Pulido, P. and Jarvis, R.P. (2020) Protein import into chloroplasts and its regulation by the ubiquitin-proteasome system. Biochem. Soc. Trans. 48: 71-82.

Sadali, N.M., Sowden, R.G., Ling, Q. and Jarvis, R.P. (2019) Differentiation of chromoplasts and other plastids in plants. Plant Cell Rep. 38: 803-818.

Jarvis, P. (2019) Chloroplast research methods: probing the targeting, localization and interactions of chloroplast proteins. J. Vis. Exp. doi:10.3791/59935.

Wu, G.Z., Meyer, E.H., Richter, A.S., Schuster, M., Ling, Q., Schöttler, M.A., Walther, D., Zoschke, R., Grimm, B., Jarvis, R.P. and Bock, R. (2019) Control of retrograde signalling by protein import and cytosolic folding stress. Nat. Plants. 5: 525-538.

Ling, Q., Broad, W., Trösch, R., Töpel, M., Demiral Sert, T., Lymperopoulos, P., Baldwin, A. and Jarvis, R.P. (2019) Ubiquitin-dependent chloroplast-associated protein degradation in plants. Science 363: eaav4467. (Press release: Oxford; BBSRC Business Magazine: Winter 2018).

Jarvis, P., ed. (2018) METHODS COLLECTION. Chloroplast Research Methods: Probing The Targeting, Localization, and Interactions of Chloroplast Proteins. J. Vis. Exp..

Watson, S.J., Sowden, R.G. and Jarvis, P. (2018) Abiotic stress-induced chloroplast proteome remodelling: a mechanistic overview. J. Exp. Bot. 69: 2773-2781.

Sowden, R.G., Watson, S.J. and Jarvis, P. (2018) The role of chloroplasts in plant pathology. Essays Biochem. 62: 21-39.

Ling, Q., Li, N. and Jarvis P. (2017) Chloroplast ubiquitin E3 ligase SP1: does it really function in peroxisomes? Plant Physiol. 175: 586-588.

Bédard, J., Trösch, R., Wu, F., Ling, Q., Flores-Pérez, Ú., Töpel, M., Nawaz, F. and Jarvis P. (2017) Suppressors of the chloroplast protein import mutant tic40 reveal a genetic link between protein import and thylakoid biogenesis. Plant Cell 29: 1726-1747.

Flores-Pérez, Ú. and Jarvis, P. (2017) Isolation and suborganellar fractionation of Arabidopsis chloroplasts. Methods. Mol. Biol. 1511: 45-60.

Ling, Q. and Jarvis, P. (2016) Analysis of protein import into chloroplasts isolated from stressed plants. J. Vis. Exp. (117), e54717, doi:10.3791/54717.

Broad, W., Ling, Q. and Jarvis, P. (2016) New insights into roles of ubiquitin modification in regulating plastids and other endosymbiotic organelles. Int. Rev. Cell Mol. Biol. 325: 1-33.

Ling, Q. and Jarvis, P. (2016) Plant signaling: ubiquitin pulls the trigger on chloroplast degradation. Curr. Biol. 26: R38-R40.

Flores-Pérez, Ú., Bédard, J., Tanabe, N., Lymperopoulos, P., Clarke, A.K. and Jarvis, P. (2016) Functional analysis of the Hsp93/ClpC chaperone at the chloroplast envelope. Plant Physiol. 170: 147-162.

Ling, Q. and Jarvis, P. (2015) Regulation of chloroplast protein import by the ubiquitin E3 ligase SP1 is important for stress tolerance in plants. Curr. Biol. 25: 2527-2534. (Press releases: Oxford; BBSRC; Media: Guardian; ABC Australia; Gizmodo; BBSRC Business Magazine: Winter 2016).

Trösch, R., Töpel, M., Flores-Pérez, Ú. and Jarvis, P. (2015) Genetic and physical interaction studies reveal functional similarities between ALBINO3 and ALBINO4 in Arabidopsis. Plant Physiol. 169: 1292-1306.

Ling, Q. and Jarvis, P. (2015) Functions of plastid protein import and the ubiquitin-proteasome system in plastid development. Biochim. Biophys. Acta. 1847: 939-948.

Jarvis, P. (2014) Plants delivered by UPS. Biology News, University of Oxford 3: 11.

Jarvis, P. and Kessler, F. (2014) Mechanisms of chloroplast protein import in plants. In: Advances in Plant Biology: Plastid Biology (S.M. Theg and F.-A. Wollman, eds.) Springer, New York, pp. 241-270.

Jarvis, P. and López-Juez, E. (2013) Biogenesis and homeostasis of chloroplasts and other plastids. Nat. Rev. Mol. Cell Biol. 14: 787-802.

Ling, Q. and Jarvis, P. (2013) Dynamic regulation of endosymbiotic organelles by ubiquitination. Trends Cell Biol. 23: 399-408.

Kasmati, A.R., Töpel, M., Khan, N.Z., Patel, R., Ling, Q., Karim, S., Aronsson, H. and Jarvis, P. (2013) Evolutionary, molecular and genetic analyses of Tic22 homologues in Arabidopsis thaliana chloroplasts. PLOS One 8: e63863.

Ling, Q., Trösch, R. and Jarvis, P. (2013) The ins and outs of chloroplast protein transport. In: Advances in Photosynthesis and Respiration, Vol. 36: Plastid Development in Leaves During Growth and Senescence (B. Biswal, K. Krupinska and U.C. Biswal, eds.) Springer, Dordrecht, The Netherlands, pp. 239-280.

Jarvis, P. (2013) Chloroplast development: new research breakthrough. University of Leicester Botanic Garden Newsletter 1: 3.

Huang, W., Ling, Q. and Jarvis, P. (2013) The ubiquitin-proteasome system regulates chloroplast biogenesis. Commun. Integr. Biol. 6: e23001.

Flores-Pérez, U. and Jarvis, P. (2013) Molecular chaperone involvement in chloroplast protein import. Biochim. Biophys. Acta 1833: 332-340.

Ling, Q., Huang, W., Baldwin, A. and Jarvis, P. (2012) Chloroplast biogenesis is regulated by direct action of the ubiquitin-proteasome system. Science 338: 655-659 (full text). (Commentary: Science Perspective; Science Signaling Editor's Choice; Nature Reviews Research Highlight; Media: press release; Daily Telegraph; Daily Mail; ABC Australia; Scientific American).

Töpel, M., Ling, Q. and Jarvis, P. (2012) Neofunctionalization within the Omp85 protein superfamily during chloroplast evolution. Plant Signal. Behav. 3: 1134-1135.

Jarvis, R.P., ed. (2011) Chloroplast Research in Arabidopsis: Methods and Protocols, Vol. I. Methods in Molecular Biology, Vol. 774. Humana Press, Totowa, NJ, USA.

Jarvis, R.P., ed. (2011) Chloroplast Research in Arabidopsis: Methods and Protocols, Vol. II. Methods in Molecular Biology, Vol. 775. Humana Press, Totowa, NJ, USA.

Aronsson, H. and Jarvis, R.P. (2011) Rapid isolation of Arabidopsis chloroplasts and their use for in vitro protein import assays. Methods. Mol. Biol. 774: 281-305.

Hyman, S. and Jarvis, R.P. (2011) Studying Arabidopsis chloroplast structural organization using transmission electron microscopy. Methods Mol. Biol. 774: 113-132.

Trösch, R. and Jarvis, P. (2011) The stromal processing peptidase of chloroplasts is essential in Arabidopsis, with knockout mutations causing embryo arrest after the 16-cell stage. PLoS One 6: e23039.

Huang, W., Ling, Q., Bédard, J., Lilley, K. and Jarvis, P. (2011) In vivo analyses of the roles of essential Omp85-related proteins in the chloroplast outer envelope membrane. Plant Physiol. 157: 147-159.

Aronsson, H. and Jarvis, P. (2011) Dimerization of TOC receptor GTPases and its implementation for the control of chloroplast protein import. Biochem. J. 436: e1-2.

Töpel, M. and Jarvis, P. (2011) The Tic20 gene family: phylogenetic analysis and evolutionary considerations. Plant Signal. Behav. 6: 1046-1048.

Kasmati, A.R., Töpel, M., Patel, R., Murtaza, G. and Jarvis, P. (2011) Molecular and genetic analyses of Tic20 homologues in Arabidopsis thaliana chloroplasts. Plant J. 66: 877-889.

Ling, Q., Huang, W. and Jarvis, P. (2011) Use of a SPAD-502 meter to measure leaf chlorophyll concentration in Arabidopsis thaliana. Photosynth. Res. 107: 209-214; erratum: Photosynth Res. 108: 89.

Aronsson, H., Combe, J., Patel, R., Agne, B., Martin, M., Kessler, F. and Jarvis, P. (2010) Nucleotide binding and dimerization at the chloroplast pre-protein import receptor, atToc33, are not essential in vivo but do increase import efficiency. Plant J. 63: 297-311.

Boij, P., Patel, R., Garcia, C., Jarvis, P. and Aronsson, H. (2009) In vivo studies on the roles of Tic55-related proteins in chloroplast protein import in Arabidopsis thaliana. Mol. Plant 2: 1397-1409.

Aronsson, H. and Jarvis, P. (2009) The chloroplast protein import apparatus, its components, and their roles. In: Plant Cell Monographs, Vol. 13: The Chloroplast – Interactions With The Environment (A.S. Sandelius and H. Aronsson, eds.) Springer-Verlag, Heidelberg, Germany, pp. 89-123.

Aronsson, H. and Jarvis, P. (2009) Book review: Regulation of gene expression in plants the role of transcript structure and processing (C.L. Basset, ed.). Ann. Bot. 104: vii-xi.

Hsu, S., Patel, R., Bédard, J., Jarvis, P. and Inoue, K. (2008) Two distinct Omp85 paralogs in the chloroplast outer envelope membrane are essential for embryogenesis in Arabidopsis thaliana. Plant Signal. Behav. 3: 1134-1135.

Aronsson, H., Schöttler, M.A., Kelly, A.A., Sundqvist, C., Dörmann, P., Karim, S. and Jarvis, P. (2008) Monogalactosyldiacylglycerol deficiency in Arabidopsis thaliana affects pigment composition in the prolamellar body and impairs thylakoid membrane energization and photoprotection in leaves. Plant Physiol. 148: 580-592.

Patel, R., Hsu, S., Bédard, J., Inoue, K. and Jarvis, P. (2008) The Omp85-related chloroplast outer envelope protein, OEP80, is essential for viability in Arabidopsis. Plant Physiol. 148: 235-245.

Sakamoto, W., Miyagishima, S. and Jarvis, P. (2008) Chloroplast biogenesis: control of plastid development, protein import, division and inheritance. Arabidopsis Book 6:e0110.

Flores-Pérez, U., Sauret-Güeto, S., Gas, E., Jarvis, P. and Rodríguez-Concepción, M. (2008) A mutant impaired in the production of plastome-encoded proteins uncovers a mechanism for the homeostasis of isoprenoid biosynthetic enzymes in Arabidopsis plastids. Plant Cell 20: 1303-1315.

Fourrier, N., Bédard, J., López-Juez, E., Barbrook, A., Bowyer, J., Jarvis, P., Warren, G. and Thorlby, G. (2008) A role for SENSITIVE TO FREEZING2 in protecting chloroplasts against freeze induced damage in Arabidopsis. Plant J. 55: 734-745.

Jarvis, P. (2008) Targeting of nucleus-encoded proteins to chloroplasts in plants (Tansley Review). New Phytol. 179: 257-285.

Kubis, S.E., Lilley, K.S. and Jarvis, P. (2008) Isolation and preparation of chloroplasts from Arabidopsis thaliana plants. Methods Mol. Biol. 425: 171-186.

Bédard, J. and Jarvis, P. (2008) Green light for chloroplast outer-membrane proteins. Nat. Cell Biol. 10: 120-122.

Aronsson, H., Boij, P., Patel, R., Wardle, A., Töpel, M. and Jarvis, P. (2007) Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana. Plant J., 52: 53-68.

Jarvis, P. (2007) Intracellular signalling: chloroplast backchat. Curr. Biol. 17: R552-R555.

Bédard, J., Kubis, S., Bimanadham, S. and Jarvis, P. (2007) Functional similarity between the chloroplast translocon component, Tic40, and the human co-chaperone, Hip. J. Biol. Chem. 282: 21404-21414.

Kovacheva, S., Bédard, J., Wardle, A., Patel, R. and Jarvis, P. (2007) Further in vivo studies on the role of the molecular chaperone, Hsp93, in plastid protein import. Plant J. 50: 364-379.

Jarvis, P. (2007) The proteomes of chloroplasts and other plastids. In: Plant Proteomics (J. Samaj and J. Thelen, eds.) Springer-Verlag, Heidelberg, Germany, pp. 207-225.

Aronsson, H., Combe, J., Patel, R. and Jarvis, P. (2006) In vivo assessment of the significance of phosphorylation of the Arabidopsis chloroplast protein import receptor, atToc33. FEBS Lett. 580: 649-655.

Bédard, J. and Jarvis, P. (2005) Recognition and envelope translocation of chloroplast preproteins. J. Exp. Bot. 56: 2287-2320.

Baldwin, A., Wardle, A., Patel, R., Dudley, P., Park, S.K., Twell, D., Inoue, K. and Jarvis, P. (2005) A molecular-genetic study of the Arabidopsis Toc75 gene family. Plant Physiol. 138: 715-733.

Kovacheva, S., Bédard, J., Patel, R., Dudley, P., Twell, D., Ríos, G., Koncz, C. and Jarvis, P. (2005) In vivo studies on the roles of Tic110, Tic40 and Hsp93 during chloroplast protein import. Plant J. 41: 412-428.

Kubis, S. (2004) GARNet service success: Which Tocs make which proteins Tic? (P. Jarvis, ed.) GARNish 2: 11.

Jarvis, P. and Robinson, C. (2004) Mechanisms of protein import and routing in chloroplasts. Curr. Biol. 14: R1064-R1077.

Kubis, S., Patel, R., Combe, J., Bédard, J., Kovacheva, S., Lilley, K., Biehl, A., Leister, D., Ríos, G., Koncz, C. and Jarvis, P. (2004) Functional specialization amongst the Arabidopsis Toc159 family of chloroplast protein import receptors. Plant Cell 16: 2059-2077.

Constan, D., Patel, R., Keegstra, K. and Jarvis, P. (2004) An outer envelope membrane component of the chloroplastic protein import apparatus plays an essential role in Arabidopsis. Plant J. 38: 93-106

Jarvis, P. (2004) Organellar proteomics: chloroplasts in the spotlight. Curr. Biol. 14: R317-R319.

Kubis, S., Baldwin, A., Patel, R., Razzaq, A., Dupree, P., Lilley, K., Kurth, J., Leister, D. and Jarvis, P. (2003) The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import and accumulation of photosynthetic proteins. Plant Cell 15: 1859-1871.

Aronsson, H., Combe, J. and Jarvis, P. (2003) Unusual nucleotide-binding properties of the chloroplast protein import receptor, atToc33. FEBS Lett. 544: 79-85.

Jarvis, P. (2003) Intracellular signalling: the language of the chloroplast. Curr. Biol. 13: R314-R316.

Stevenson, D.S. and Jarvis, P. (2003) Chromatin silencing: RNA in the driving seat. Curr. Biol. 13: R13-R15.

Aronsson, H. and Jarvis, P. (2002) A simple method for isolating import-competent Arabidopsis chloroplasts. FEBS Lett. 529: 215-220.

Jarvis, P. and Soll, J. (2002) Erratum: Toc, Tic, and chloroplast protein import. Biochim. Biophys. Acta 1590: 177-189.

Jarvis, P. and Soll, J. (2001) Toc, Tic, and chloroplast protein import. Biochim. Biophys. Acta 1541: 64-97.

Jarvis, P. (2001) Intracellular signalling: the chloroplast talks! Curr. Biol. 11: R307-R310.

Jarvis, P., Dörmann, P., Peto, C.A, Lutes, J., Benning, C. and Chory, J. (2000) Galactolipid-deficiency and abnormal chloroplast development in the Arabidopsis MGD Synthase 1 mutant. Proc. Natl. Acad. Sci. USA 97: 8175-8179.

Jarvis, P., Peto, C., Chory, J., Chen, L.-J. and Li, H.-m. (1999) Characterization of the Arabidopsis ppi1 mutant. In The Chloroplast: From Molecular Biology to Biotechnology (J. Argyroudi-Akoyunoglou, ed.) Kluwer Academic Publishers, Dordrecht, 137-142.

Jarvis, P., Chen, L.-J., Li, H.-m., Peto, C., Fankhauser, C. and Chory, J. (1998) An Arabidopsis mutant defective in the chloroplast general protein import apparatus. Science 282: 100-103.

López-Juez, E., Jarvis, R.P., Takeuchi, A., Page, A.M. and Chory J. (1998) New Arabidopsis cue mutants suggest a close connection between plastid and phytochrome regulation of nuclear gene expression. Plant Physiol. 118: 803-815.

Jarvis, P., Belzile, F., Page, T. and Dean, C. (1997) Increased Ac excision (iae): Arabidopsis thaliana mutations affecting Ac transposition. Plant J. 11: 907-919.

Jarvis, P., Belzile, F., and Dean, C. (1997) Inefficient and incorrect processing of the Ac transposase transcript in iae1 and wild-type Arabidopsis thaliana. Plant J. 11: 921-931.

Jarvis, P. and Dean, C. (1996) Identification and analysis of host genes controlling transposable element mobility in Arabidopsis. John Innes Centre Ann. Rep. 15.

Jarvis, P., Lister, C.K., Szabo, V. and Dean, C. (1994) Integration of CAPS markers into the RFLP map generated using recombinant inbred lines of Arabidopsis thaliana. Plant Mol. Biol. 24: 685-687.

Slocombe, S.P., Cummins, I., Jarvis, R.P. and Murphy, D.J. (1992) Nucleotide sequence and temporal regulation of a seed-specific Brassica napus cDNA encoding a stearoyl-acyl carrier protein (ACP) desaturase. Plant Mol. Biol. 20: 151-155.

Keddie, J.S., Hubner, G., Slocombe, S.P., Jarvis, R.P., Cummins, I., Edwards, E.W., Shaw, C.H. and Murphy, D.J. (1992) Cloning and characterization of an oleosin gene from Brassica napus. Plant Mol. Biol. 19: 443-453.


[Jarvis Lab Home Page] [Jarvis Lab Research] [Jarvis Lab People] [Jarvis Lab Publications] [Jarvis Lab Funding] [Jarvis Lab Vacancies] [University Home] [Department Home] [Group Home]

 Last updated: Sept 2022
 Paul Jarvis